ParticleChromo3D+

A Web Server for ParticleChromo3D Algorithm
for 3D Chromosome Structure Reconstruction






ParticleChromo3D Parameters

Swarm Size: Number of particles in system

Iteration Count: Maximum iterations before stopping

Threshold: Error threshold before stopping

Random Range: Range of x,y,z starting coords. Random value bewtween -randRange,randRange

Loss Function:

Out File Name: Filename of the output pdb model

Email Upon Completion (required):

Upload Matrix (square matrix tab separated or convert)

Example Interaction Frequency Matrix for 1MB GM12878 (Knight-Ruiz normalized)








UCCS